PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093357.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 527aa    MW: 57561.8 Da    PI: 8.3085
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093357.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-053355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_010093357.1 33 FICEVCNKGFQREQNLQLHRRGH 55
                    89*******************88 PP

2zf-C2H213.30.00025109131123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H +t+
  XP_010093357.1 109 WKCEKCSKRYAVQSDWKAHSKTC 131
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-63255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-73255No hitNo description
SMARTSM003550.00523355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.993355IPR007087Zinc finger, C2H2
PfamPF121712.5E-53355IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
SMARTSM0035516074104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-597130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-7104129No hitNo description
SMARTSM00355130109129IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAAAPSSVPF FGSDADAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK  60
LKQKTNKEPK RKVFLCPEPT CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKRYAV  120
QSDWKAHSKT CGTREYRCEC GTLFSRRDSL ITHRAFCDAL AQETARHPAS LNTIGGHQIY  180
GNSHVNLSLS QIGSQFSSLQ NHPSSSILRL GSTTVTTPKL EHLINPSSNP SSFGNPPQNN  240
FPTSAFFNIP ESPNQNFQHH HQSDHHHHNQ PFFSNKPLHV LTQLPDLQPN NNNSSSSDLF  300
NLGFFSNVDG NGTGTNHGTT IFSTSHVGGD HIVGSGMSSS LLYSDINNSV RQENLSPQMS  360
ATALLQKAAQ IESTSSLVDA SSLLRSLRDS ATRAAVKSER DQLNIASSSS FGTGDPTMGN  420
ESHLQGFMNS LANNGSSSNA FGGFNGDGIS LEQRQDNRNL SDLDETNKLH QNLGMHFGES  480
DKLTLDFLGV GEIVRNMQGG GIGGMGSLDP QLKSTQQSQL FGGTTLQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093357.10.0Zinc finger protein MAGPIE
TrEMBLW9R3X00.0W9R3X0_9R
STRINGVIT_01s0010g02090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-108indeterminate(ID)-domain 5